IL_4V8P_094
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- UCAAAGU*AACCAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_094 not in the Motif Atlas
- Homologous match to IL_5TBW_088
- Geometric discrepancy: 0.1581
- The information below is about IL_5TBW_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V8P|1|A1|U|2206
4V8P|1|A1|C|2207
4V8P|1|A1|A|2208
4V8P|1|A1|A|2209
4V8P|1|A1|A|2210
4V8P|1|A1|G|2211
4V8P|1|A1|U|2212
*
4V8P|1|A1|A|2223
4V8P|1|A1|A|2224
4V8P|1|A1|C|2225
4V8P|1|A1|C|2226
4V8P|1|A1|A|2227
4V8P|1|A1|A|2228
4V8P|1|A1|G|2229
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AC
- 60S RIBOSOMAL PROTEIN L36A
- Chain AQ
- 60S RIBOSOMAL PROTEIN L36
- Chain BA
- RPL8
Coloring options: