IL_4V8P_096

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

4V8P|1|A1|A|2276, 4V8P|1|A1|C|2282, 4V8P|1|A1|C|2301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_096 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1831

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V8P|1|A1|C|2272
4V8P|1|A1|C|2273
4V8P|1|A1|A|2274
4V8P|1|A1|A|2275
4V8P|1|A1|A|2276
4V8P|1|A1|U|2277
4V8P|1|A1|G|2278
4V8P|1|A1|C|2279
4V8P|1|A1|C|2280
4V8P|1|A1|U|2281
4V8P|1|A1|C|2282
4V8P|1|A1|G|2283
*
4V8P|1|A1|C|2299
4V8P|1|A1|G|2300
4V8P|1|A1|C|2301
4V8P|1|A1|G|2302

Current chains

Chain A1

26S RRNA

Nearby chains

Chain H1

Large subunit ribosomal RNA; LSU rRNA