IL_4V8P_101

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UAGU*GGGGG

Length

9 nucleotides

Bulged bases

4V8P|1|A1|G|2595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_101 not in the Motif Atlas

Geometric match to IL_3NPQ_006

Geometric discrepancy: 0.3467

The information below is about IL_3NPQ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

4V8P|1|A1|U|2418
4V8P|1|A1|A|2419
4V8P|1|A1|G|2420
4V8P|1|A1|U|2421
*
4V8P|1|A1|G|2592
4V8P|1|A1|G|2593
4V8P|1|A1|G|2594
4V8P|1|A1|G|2595
4V8P|1|A1|G|2596

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AC

60S RIBOSOMAL PROTEIN L36A

Chain BA

RPL8

Chain BL

RIBOSOMAL PROTEIN L15