IL_4V8P_106
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CAG*CGUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_106 not in the Motif Atlas
- Homologous match to IL_8C3A_108
- Geometric discrepancy: 0.1431
- The information below is about IL_8C3A_108
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71241.2
- Basepair signature
- cWW-cWW-tSH-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
4V8P|1|A1|C|2655
4V8P|1|A1|A|2656
4V8P|1|A1|G|2657
*
4V8P|1|A1|C|2675
4V8P|1|A1|G|2676
4V8P|1|A1|U|2677
4V8P|1|A1|A|2678
4V8P|1|A1|G|2679
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain B3
- 5S ribosomal RNA; 5S rRNA
- Chain BD
- 60S RIBOSOMAL PROTEIN L11
- Chain BM
- 60S RIBOSOMAL PROTEIN L5
- Chain BP
- 60S RIBOSOMAL PROTEIN L21
Coloring options: