IL_4V8P_107
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_107 not in the Motif Atlas
- Homologous match to IL_8C3A_109
- Geometric discrepancy: 0.2251
- The information below is about IL_8C3A_109
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
4V8P|1|A1|U|2707
4V8P|1|A1|U|2708
4V8P|1|A1|G|2709
4V8P|1|A1|A|2710
*
4V8P|1|A1|U|2724
4V8P|1|A1|A|2725
4V8P|1|A1|C|2726
4V8P|1|A1|A|2727
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AC
- 60S RIBOSOMAL PROTEIN L36A
- Chain AT
- RPL29
- Chain BM
- 60S RIBOSOMAL PROTEIN L5
- Chain BN
- RPL18
- Chain BP
- 60S RIBOSOMAL PROTEIN L21
Coloring options: