IL_4V8P_108

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AAC*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_108 not in the Motif Atlas

Geometric match to IL_5AOX_001

Geometric discrepancy: 0.1619

The information below is about IL_5AOX_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V8P|1|A1|A|2758
4V8P|1|A1|A|2759
4V8P|1|A1|C|2760
*
4V8P|1|A1|G|2775
4V8P|1|A1|C|2776
4V8P|1|A1|U|2777

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AC

60S RIBOSOMAL PROTEIN L36A

Chain BK

60S RIBOSOMAL PROTEIN L27A

Chain BN

RPL18