IL_4V8P_113

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

4V8P|1|A1|U|2848

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_113 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.125

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4V8P|1|A1|G|2816
4V8P|1|A1|U|2817
4V8P|1|A1|G|2818
*
4V8P|1|A1|U|2846
4V8P|1|A1|U|2847
4V8P|1|A1|U|2848
4V8P|1|A1|U|2849
4V8P|1|A1|U|2850

Current chains

Chain A1

26S RRNA

Nearby chains

Chain BB

RIBOSOMAL PROTEIN L3

Chain BH

60S RIBOSOMAL PROTEIN L10