IL_4V8P_137
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CAA*UCAG
- Length
- 7 nucleotides
- Bulged bases
- 4V8P|1|B2|A|96
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_137 not in the Motif Atlas
- Homologous match to IL_5TBW_145
- Geometric discrepancy: 0.1174
- The information below is about IL_5TBW_145
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_54650.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
4V8P|1|B2|C|67
4V8P|1|B2|A|68
4V8P|1|B2|A|69
*
4V8P|1|B2|U|94
4V8P|1|B2|C|95
4V8P|1|B2|A|96
4V8P|1|B2|G|97
Current chains
- Chain B2
- 5.8S RRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AA
- RIBOSOMAL PROTEIN L37
- Chain BS
- RPL26
- Chain BU
- RPL35
Coloring options: