IL_4V8P_146
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GUGGAUA*UUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66414.2
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
4V8P|1|C2|G|16
4V8P|1|C2|U|17
4V8P|1|C2|G|18
4V8P|1|C2|G|19
4V8P|1|C2|A|20
4V8P|1|C2|U|21
4V8P|1|C2|A|22
*
4V8P|1|D1|U|401
4V8P|1|D1|U|402
4V8P|1|D1|G|403
4V8P|1|D1|A|404
4V8P|1|D1|A|405
4V8P|1|D1|A|406
4V8P|1|D1|C|407
Current chains
- Chain C2
- 5.8S RRNA
- Chain D1
- 26S RRNA
Nearby chains
- Chain CC
- RPL4
- Chain CQ
- RPL17
- Chain CX
- 60S RIBOSOMAL PROTEIN L32
Coloring options: