Motif IL_66414.2 Version IL_66414.2 of this group appears in releases 3.3 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11		12		13		14	1-14	2-13	3-12	4-11	5-10	6-9	6-10	7-8	10-11
1	IL_4V5O_093	4V5O	0.6684	1	tWH-tWH-tHW-tHW (H)	BA	SSU rRNA	G	137	G	138	A	139	U	140	A	141	A	142	C	143	*	G	159	C	160	U	161	A	162	A	163	A	165	C	166	cWW	cWW	ntWW			ntHW		cWW	ncWH
2	IL_4IOA_001	4IOA	0.0790	0	Triple sheared with non-canonical cWW (H)	X	LSU rRNA	C	520	U	521	G	522	A	523	A	524	A	525	C	526	*	G	24	U	25	G	26	G	27	A	28	U	29	G	30	cWW	cwW	tSH	tHS	tHS	ntHS		cWW
3	IL_4WF9_001	4WF9	0.0565	0	Triple sheared with non-canonical cWW	X	LSU rRNA	C	555	U	556	G	557	A	558	A	559	A	560	C	561	*	G	24	U	25	G	26	G	27	A	28	U	29	G	30	cWW	cwW	tSH	tHS	tHS	ntHS		cWW
4	IL_5J7L_245	5J7L	0.0000	0	Triple sheared with non-canonical cWW	DA	LSU rRNA	C	510	U	511	G	512	A	513	A	514	A	515	C	516	*	G	24	U	25	G	26	G	27	A	28	U	29	G	30	cWW	cwW	tSH	tHS	tHS	ntHS		cWW
5	IL_4Y4O_179	4Y4O	0.0604	0	Triple sheared with non-canonical cWW (H)	2A	LSU rRNA	C	510	U	511	G	512	A	513	A	514	A	515	C	516	*	G	24	U	25	G	26	G	27	A	28	U	29	G	30	cWW	cwW	ntSH	tHS	tHS	ntHS		cWW
6	IL_4V8P_146	4V8P	0.0873	0	Triple sheared with non-canonical cWW (H)	D1+C2	LSU rRNA	U	401	U	402	G	403	A	404	A	405	A	406	C	407	*	G	16	U	17	G	18	G	19	A	20	U	21	A	22	cWW	cwW	ntSH	tHS	tHS		ncWS	cWW
7	IL_5TBW_015	5TBW	0.1208	0	Triple sheared with non-canonical cWW	1+4	LSU rRNA + 5.8S rRNA	G	404	U	405	G	406	A	407	A	408	A	409	U	410	*	A	13	C	14	G	15	G	16	A	17	U	18	C	19	cWW	cwW	ntSH	tHS	tHS	ntHS	ncWS	cWW
8	IL_4V9F_001	4V9F	0.1349	0	Triple sheared with non-canonical cWW	0	LSU rRNA	A	516	U	517	G	518	A	519	A	520	A	521	U	522	*	G	21	U	22	G	23	G	24	A	25	U	26	U	27	cWW	cwW	tSH	tHS	tHS			cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUGAAAC*GUGGAUG	4
GGAUAAC*GCUAAUAC	1
UUGAAAC*GUGGAUA	1
GUGAAAU*ACGGAUC	1
AUGAAAU*GUGGAUU	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGAAA*UGGAU	6
GAUAA*CUAAUA	1
UGAAA*CGGAU	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Triple sheared with non-canonical cWW (4)
Triple sheared with non-canonical cWW (H) (3)
tWH-tWH-tHW-tHW (H) (1)
Basepair signature: cWW-cWW-tSH-tHS-tHS-L-R-cWW
Heat map statistics: Min 0.06 | Avg 0.22 | Max 0.68

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