IL_4V8P_148

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CAAU*AUCAG

Length

9 nucleotides

Bulged bases

4V8P|1|C2|A|96

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85877.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

68

Unit IDs

4V8P|1|C2|C|67
4V8P|1|C2|A|68
4V8P|1|C2|A|69
4V8P|1|C2|U|70
*
4V8P|1|C2|A|93
4V8P|1|C2|U|94
4V8P|1|C2|C|95
4V8P|1|C2|A|96
4V8P|1|C2|G|97

Current chains

Chain C2

5.8S RRNA

Nearby chains

Chain CS

RPL26

Chain CU

RPL35

Chain D1

Large subunit ribosomal RNA; LSU rRNA

Chain DA

RIBOSOMAL PROTEIN L37