IL_4V8P_162

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GAAG*CAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

32

Unit IDs

4V8P|1|D1|G|125
4V8P|1|D1|A|126
4V8P|1|D1|A|127
4V8P|1|D1|G|128
*
4V8P|1|D1|C|138
4V8P|1|D1|A|139
4V8P|1|D1|A|140
4V8P|1|D1|C|141

Current chains

Chain D1

26S RRNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain CF

RPL7A

Chain CL

RIBOSOMAL PROTEIN L15

Chain CR

RPL23A

Chain CU

RPL35