IL_4V8P_169

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GAAC*GGGCUAAAAGAC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.2

Basepair signature

cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V8P|1|D1|G|375
4V8P|1|D1|A|376
4V8P|1|D1|A|377
4V8P|1|D1|C|378
*
4V8P|1|D1|G|389
4V8P|1|D1|G|390
4V8P|1|D1|G|391
4V8P|1|D1|C|392
4V8P|1|D1|U|393
4V8P|1|D1|A|394
4V8P|1|D1|A|395
4V8P|1|D1|A|396
4V8P|1|D1|A|397
4V8P|1|D1|G|398
4V8P|1|D1|A|399
4V8P|1|D1|C|400

Current chains

Chain D1

26S RRNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain CQ

RPL17

Chain CS

RPL26

Chain DB

RPL39