Motif IL_60992.2 Version IL_60992.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 1-14 | 1-16 | 2-6 | 2-15 | 3-6 | 4-5 | 7-14 | 8-12 | 9-13 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V8P_169 | 4V8P | 0.2502 | 0 | D1 | LSU rRNA | G | 375 | A | 376 | A | 377 | C | 378 | * | G | 389 | G | 390 | G | 391 | C | 392 | U | 393 | A | 394 | A | 395 | A | 396 | A | 397 | G | 398 | A | 399 | C | 400 | ntSS | cWW | tHS | cWW | ncWB | ||||
| 2 | IL_5TBW_014 | 5TBW | 0.2330 | 2 | 1 | LSU rRNA | G | 376 | A | 377 | A | 378 | C | 379 | * | G | 390 | A | 391 | G | 392 | U | 393 | G | 394 | A | 395 | A | 396 | A | 397 | A | 399 | G | 400 | U | 401 | C | 403 | tSS | cWW | ncSW | tHS | cWW | cWB | tWH | tSH | |
| 3 | IL_4WF9_015 | 4WF9 | 0.0000 | 2 | X | LSU rRNA | G | 527 | C | 528 | A | 529 | C | 530 | * | G | 541 | A | 542 | G | 543 | U | 544 | G | 545 | A | 546 | A | 547 | A | 548 | A | 550 | G | 551 | A | 552 | C | 554 | tSS | cWW | cSW | tHS | cWW | cWB | tWH | ntSH | |
| 4 | IL_4Y4O_191 | 4Y4O | 0.1379 | 2 | 2A | LSU rRNA | G | 481 | A | 482 | A | 483 | C | 484 | * | G | 496 | A | 497 | G | 498 | U | 499 | G | 500 | A | 501 | A | 502 | A | 503 | A | 505 | G | 506 | A | 507 | C | 509 | tSS | cWW | cSW | ntHH | tHS | cWW | cWB | tWH | tSH |
| 5 | IL_5J7L_255 | 5J7L | 0.1345 | 2 | DA | LSU rRNA | G | 481 | A | 482 | A | 483 | C | 484 | * | G | 496 | A | 497 | G | 498 | U | 499 | G | 500 | A | 501 | A | 502 | A | 503 | A | 505 | G | 506 | A | 507 | C | 509 | tSS | cWW | cSW | ntHH | tHS | cWW | cWB | tWH | tSH |
| 6 | IL_4IOA_009 | 4IOA | 0.1828 | 2 | X | LSU rRNA | G | 492 | A | 493 | A | 494 | C | 495 | * | G | 506 | A | 507 | G | 508 | U | 509 | G | 510 | A | 511 | A | 512 | A | 513 | A | 515 | G | 516 | A | 517 | C | 519 | tSS | cWW | cSW | tHH | tHS | cWW | cWB | tWH | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAC*GGGCUAAAAGAC | 1 |
| GAAC*GAGUGAAAAAGUAC | 1 |
| GCAC*GAGUGAAAUAGAAC | 1 |
| GAAC*GAGUGAAAUAGAGC | 1 |
| GAAC*GAGUGAAAAAGAAC | 1 |
| GAAC*GAGUGAAAGAGAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*GGCUAAAAGA | 1 |
| AA*AGUGAAAAAGUA | 1 |
| CA*AGUGAAAUAGAA | 1 |
| AA*AGUGAAAUAGAG | 1 |
| AA*AGUGAAAAAGAA | 1 |
| AA*AGUGAAAGAGAA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW
- Heat map statistics
- Min 0.11 | Avg 0.19 | Max 0.36
Coloring options: