IL_4V8P_174

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GGGAAG*CAGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48233.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4V8P|1|D1|G|457
4V8P|1|D1|G|458
4V8P|1|D1|G|459
4V8P|1|D1|A|460
4V8P|1|D1|A|461
4V8P|1|D1|G|462
*
4V8P|1|D1|C|516
4V8P|1|D1|A|517
4V8P|1|D1|G|518
4V8P|1|D1|A|519
4V8P|1|D1|A|520
4V8P|1|D1|C|521

Current chains

Chain D1

26S RRNA

Nearby chains

Chain DO

RPL28