Motif IL_48233.1 Version IL_48233.1 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4EYA_005 | 4EYA | 0.8855 | 0 | Tandem non-canonical cWW pairs with near WC pairs | h+g | RNA (12-mer) | C | 5 | C | 6 | U | 7 | U | 8 | G | 9 | G | 10 | * | C | 5 | C | 6 | U | 7 | U | 8 | G | 9 | G | 10 | cWW | ncWW | ncwW | ncWW | ncWS | |
| 2 | IL_5TBW_026 | 5TBW | 0.2737 | 0 | 1 | LSU rRNA | C | 768 | G | 769 | G | 770 | A | 771 | U | 772 | G | 773 | * | C | 758 | U | 759 | G | 760 | A | 761 | U | 762 | G | 763 | cWW | ntSH | ntSH | tHS | cWw | cWW | |
| 3 | IL_4V5O_155 | 4V5O | 0.1820 | 0 | BA | SSU rRNA | G | 1512 | G | 1513 | G | 1514 | A | 1515 | U | 1516 | A | 1517 | * | U | 1538 | U | 1539 | G | 1540 | A | 1541 | A | 1542 | C | 1543 | cWW | tSH | ntSH | tHS | cWw | cWW | |
| 4 | IL_4V88_462 | 4V88 | 0.1946 | 0 | A6 | SSU rRNA | G | 1540 | G | 1541 | G | 1542 | A | 1543 | U | 1544 | A | 1545 | * | U | 1566 | U | 1567 | C | 1568 | A | 1569 | A | 1570 | C | 1571 | cWW | tSH | tSH | cWw | cWW | ||
| 5 | IL_4LFB_055 | 4LFB | 0.0000 | 0 | A | SSU rRNA | C | 1303 | G | 1304 | G | 1305 | A | 1306 | U | 1307 | U | 1308 | * | A | 1329 | U | 1330 | G | 1331 | A | 1332 | A | 1333 | G | 1334 | cWW | tSH | ntSH | ntHS | cWw | cWW | |
| 6 | IL_5J7L_057 | 5J7L | 0.2433 | 0 | AA | SSU rRNA | C | 1303 | G | 1304 | G | 1305 | A | 1306 | U | 1307 | U | 1308 | * | A | 1329 | U | 1330 | G | 1331 | A | 1332 | A | 1333 | G | 1334 | cWW | tSH | tHS | cWw | cWW | ||
| 7 | IL_4V8P_194 | 4V8P | 0.2487 | 1 | D1 | LSU rRNA | U | 880 | G | 881 | G | 882 | A | 883 | A | 884 | C | 886 | * | G | 858 | U | 859 | G | 860 | A | 861 | A | 862 | G | 863 | cWW | tSH | tSH | cWW | |||
| 8 | IL_4V8P_174 | 4V8P | 0.7864 | 0 | D1 | LSU rRNA | C | 516 | A | 517 | G | 518 | A | 519 | A | 520 | C | 521 | * | G | 457 | G | 458 | G | 459 | A | 460 | A | 461 | G | 462 | cWW | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGAUU*AUGAAG | 2 |
| CCUUGG*CCUUGG | 1 |
| CGGAUG*CUGAUG | 1 |
| GGGAUA*UUGAAC | 1 |
| GGGAUA*UUCAAC | 1 |
| UGGAAGC*GUGAAG | 1 |
| CAGAAC*GGGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAU*UGAA | 3 |
| CUUG*CUUG | 1 |
| GGAU*UGAU | 1 |
| GGAU*UCAA | 1 |
| GGAAG*UGAA | 1 |
| AGAA*GGAA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Tandem non-canonical cWW pairs with near WC pairs (1)
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Heat map statistics
- Min 0.18 | Avg 0.48 | Max 1.03
Coloring options: