IL_4V8P_179

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CAGAG*UGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_37811.2

Basepair signature

cWW-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V8P|1|D1|C|475
4V8P|1|D1|A|476
4V8P|1|D1|G|477
4V8P|1|D1|A|478
4V8P|1|D1|G|479
*
4V8P|1|D1|U|499
4V8P|1|D1|G|500
4V8P|1|D1|A|501
4V8P|1|D1|G|502

Current chains

Chain D1

26S RRNA

Nearby chains

Chain CC

RPL4