IL_4V8P_190

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CUUGAG*CGAAGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38680.1

Basepair signature

cWW-tSH-tHS-tHS-L-R-cWW

Number of instances in this motif group

4

Unit IDs

4V8P|1|D1|C|781
4V8P|1|D1|U|782
4V8P|1|D1|U|783
4V8P|1|D1|G|784
4V8P|1|D1|A|785
4V8P|1|D1|G|786
*
4V8P|1|D1|C|794
4V8P|1|D1|G|795
4V8P|1|D1|A|796
4V8P|1|D1|A|797
4V8P|1|D1|G|798
4V8P|1|D1|G|799

Current chains

Chain D1

26S RRNA

Nearby chains

Chain CK

60S RIBOSOMAL PROTEIN L27A

Chain DT

RPL29

Chain DU

RPL13