IL_4V8P_194

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GUGAAG*UGGAAGC

Length

13 nucleotides

Bulged bases

4V8P|1|D1|G|885

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48233.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4V8P|1|D1|G|858
4V8P|1|D1|U|859
4V8P|1|D1|G|860
4V8P|1|D1|A|861
4V8P|1|D1|A|862
4V8P|1|D1|G|863
*
4V8P|1|D1|U|880
4V8P|1|D1|G|881
4V8P|1|D1|G|882
4V8P|1|D1|A|883
4V8P|1|D1|A|884
4V8P|1|D1|G|885
4V8P|1|D1|C|886

Current chains

Chain D1

26S RRNA

Nearby chains

Chain CA

RPL8

Chain CO

RPL19

Chain CY

RPL37A