IL_4V8P_202
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- AGGUAA*UAAAUU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50587.2
- Basepair signature
- cWW-tSH-tWH-tHW-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V8P|1|D1|A|1018
4V8P|1|D1|G|1019
4V8P|1|D1|G|1020
4V8P|1|D1|U|1021
4V8P|1|D1|A|1022
4V8P|1|D1|A|1023
*
4V8P|1|D1|U|1078
4V8P|1|D1|A|1079
4V8P|1|D1|A|1080
4V8P|1|D1|A|1081
4V8P|1|D1|U|1082
4V8P|1|D1|U|1083
Current chains
- Chain D1
- 26S RRNA
Nearby chains
- Chain C3
- 5S ribosomal RNA; 5S rRNA
- Chain CH
- 60S RIBOSOMAL PROTEIN L10
- Chain CM
- 60S RIBOSOMAL PROTEIN L5
- Chain CP
- 60S RIBOSOMAL PROTEIN L21
- Chain CV
- 60S RIBOSOMAL PROTEIN L7
- Chain DX
- RPL18A
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