Motif IL_50587.2 Version IL_50587.2 of this group appears in releases 3.3 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	break		7		8		9		10		11		12	1-12	2-10	2-11	3-10	4-9	5-8	6-7	9-10
1	IL_4V8P_202	4V8P	0.5201		D1	LSU rRNA	U	1078	A	1079	A	1080	A	1081	U	1082	U	1083	*	A	1018	G	1019	G	1020	U	1021	A	1022	A	1023	cWW		tSH	tHW		cBW	cWW	cSH
2	IL_1MFQ_007	1MFQ	0.1596	tSH-tHW-tHS-cWW	A	SRP RNA	C	190	C	191	A	192	G	193	G	194	U	195	*	G	204	A	205	G	206	C	207	A	208	G	209	cWW	tWH	ntSH	tHW	tHS	cWW	cWW
3	IL_1LNT_002	1LNT	0.0000	tSH-tHW-tHS-cWW	A+B	RNA (12-mer)	U	4	C	5	A	6	G	7	G	8	U	9	*	A	16	A	17	G	18	C	19	A	20	G	21	cWW		tSH	tHW	tHS	cWW	cWW
4	IL_3LQX_002	3LQX	0.1413	tSH-tHW-tHS-cWW	B	SRP RNA	U	146	C	147	A	148	G	149	G	150	U	151	*	A	160	A	161	G	162	C	163	A	164	G	165	cWW		tSH	tHW	tHS	cWW	cWW
5	IL_2XXA_008	2XXA	0.1972		F	SSRP RNA	U	40	C	41	A	42	G	43	A	44	G	45	*	C	54	A	55	G	56	C	57	A	58	G	59	cWW		ntSH	ntHW	tHS	cWw	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UCAGGU*AAGCAG	2
UAAAUU*AGGUAA	1
CCAGGU*GAGCAG	1
UCAGAG*CAGCAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
CAGG*AGCA	3
AAAU*GGUA	1
CAGA*AGCA	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: tSH-tHW-tHS-cWW (3)
(2)
Basepair signature: cWW-tSH-tWH-tHW-tHS-cWW-cWW
Heat map statistics: Min 0.14 | Avg 0.25 | Max 0.53

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