IL_4V8P_205

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85877.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

68

Unit IDs

4V8P|1|D1|A|1032
4V8P|1|D1|U|1033
4V8P|1|D1|U|1034
4V8P|1|D1|A|1035
*
4V8P|1|D1|U|1067
4V8P|1|D1|U|1068
4V8P|1|D1|C|1069
4V8P|1|D1|U|1070

Current chains

Chain D1

26S RRNA

Nearby chains

Chain C3

5S ribosomal RNA; 5S rRNA

Chain CH

60S RIBOSOMAL PROTEIN L10

Chain CM

60S RIBOSOMAL PROTEIN L5