3D structure

PDB id
4V8P (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
Experimental method
X-RAY DIFFRACTION
Resolution
3.52 Å

Loop

Sequence
AUACGGACAG*CCGAAU
Length
16 nucleotides
Bulged bases
4V8P|1|D1|G|1248
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_30294.1
Basepair signature
cWW-L-R-tSS-L-tSH-L-R-L-cWW-cWW
Number of instances in this motif group
1

Unit IDs

4V8P|1|D1|A|1244
4V8P|1|D1|U|1245
4V8P|1|D1|A|1246
4V8P|1|D1|C|1247
4V8P|1|D1|G|1248
4V8P|1|D1|G|1249
4V8P|1|D1|A|1250
4V8P|1|D1|C|1251
4V8P|1|D1|A|1252
4V8P|1|D1|G|1253
*
4V8P|1|D1|C|1310
4V8P|1|D1|C|1311
4V8P|1|D1|G|1312
4V8P|1|D1|A|1313
4V8P|1|D1|A|1314
4V8P|1|D1|U|1315

Current chains

Chain D1
26S RRNA

Nearby chains

Chain CE
60S RIBOSOMAL PROTEIN L9
Chain CG
RPLP0

Coloring options:

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