IL_4V8P_222

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GUAGUAG*CGAACC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_35110.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V8P|1|D1|G|1470
4V8P|1|D1|U|1471
4V8P|1|D1|A|1472
4V8P|1|D1|G|1473
4V8P|1|D1|U|1474
4V8P|1|D1|A|1475
4V8P|1|D1|G|1476
*
4V8P|1|D1|C|2349
4V8P|1|D1|G|2350
4V8P|1|D1|A|2351
4V8P|1|D1|A|2352
4V8P|1|D1|C|2353
4V8P|1|D1|C|2354

Current chains

Chain D1

26S RRNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain CB

RIBOSOMAL PROTEIN L3

Chain CC

RPL4

Chain CQ

RPL17