RNA 3D Hub //

Motif IL_35110.2 Version IL_35110.2 of this group appears in releases 3.3 to 3.11

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10 11 12 131-132-123-114-55-106-97-8
1 IL_4WF9_1004WF90.34970Sarcin-Ricin target in LSU H95; G-bulgeX LSU rRNAU2679U2680A2681G2682U2683A2684C2685*G2690G2691A2692C2693C2694G2695cWWtWHtHScWW
2 IL_4Y4O_2784Y4O0.35390Sarcin-Ricin target in LSU H95; G-bulge2A LSU rRNAC2652U2653A2654G2655U2656A2657C2658*G2663G2664A2665C2666C2667G2668cWWcSHtWHtHScWW
3 IL_5J7L_3465J7L0.31540Sarcin-Ricin target in LSU H95; G-bulgeDA LSU rRNAC2652U2653A2654G2655U2656A2657C2658*G2663G2664A2665C2666C2667G2668cWWcSHtWHtHScWW
4 IL_4IOA_0964IOA0.31450Sarcin-Ricin target in LSU H95; G-bulgeX LSU rRNAC2631U2632A2633G2634U2635A2636C2637*G2642G2643A2644C2645C2646G2647cWWcSHtWHtHScWW
5 IL_4V9F_0194V9F0.259907x6 Sarcin-Ricin; G-bulge0 LSU rRNAC585C586A587G588U589A590A591*U567G568A569C570C571G572cWWcWBcSHtWHtHScWW
6 IL_4Y4O_1854Y4O0.122507x6 Sarcin-Ricin; G-bulge2A LSU rRNAU239G240A241G242U243A244G245*C253G254A255A256A257G258cWWtSHtHHcSHtWHtHScWW
7 IL_4V9F_0074V9F0.115907x6 Sarcin-Ricin; G-bulge0 LSU rRNAU210U211A212G213U214A215A216*U224G225A226A227C228G229cWWtSHtHHcSHtWHtHScWW
8 IL_5J7L_2515J7L0.000007x6 Sarcin-Ricin; G-bulgeDA LSU rRNAC239C240A241G242U243A244G245*C253G254A255A256C257G258cWWtSHtHHcSHtWHtHScWW
9 IL_4V9F_0494V9F0.207207x6 Sarcin-Ricin; G-bulge0 LSU rRNAA1367U1368A1369G1370U1371A1372G1373*U2052G2053A2054A2055C2056U2057cWWtSHtHHcSHtWHtHScWW
10 IL_5TBW_0615TBW0.222007x6 Sarcin-Ricin; G-bulge1 LSU rRNAG1444U1445A1446G1447U1448A1449G1450*C2354G2355A2356A2357A2358C2359cWWtSHtHHcSHtWHtHScWW
11 IL_4V8P_2224V8P0.236707x6 Sarcin-Ricin; G-bulgeD1 LSU rRNAG1470U1471A1472G1473U1474A1475G1476*C2349G2350A2351A2352C2353C2354cWWntSHtHHcSHtWHtHScWW
12 IL_4V9F_0924V9F0.21330Sarcin-Ricin target in LSU H95; G-bulge0 LSU rRNAA2689U2690A2691G2692U2693A2694C2695*G2700G2701A2702A2703C2704U2705cWWtSHtHHcSHtWHtHScWW
13 IL_4V9F_1064V9F0.204807x6 Sarcin-Ricin; G-bulge9 5S rRNAG75G76A77G78U79A80C81*G101G102A103A104A105U106ncWWtSHtHHcSHtWHtHScWW
14 IL_1NBS_0071NBS0.212107x6 Sarcin-Ricin; G-bulgeB RNase P class BU165G166A167G168U169A170U171*A138A139A140A141A142A143cWWntSHtHHcSHntWHtHScWW
15 IL_4V5O_1314V5O0.247317x6 Sarcin-Ricin; G-bulgeBA SSU rRNAG1083A1084A1085G1086U1087A1088G1090*U1102G1103A1104A1105A1106C1107cWWtSHntWHtHSncWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUAGUAC*GGACCG3
UUAGUAC*GGACCG1
CCAGUAA*UGACCG1
UGAGUAG*CGAAAG1
UUAGUAA*UGAACG1
CCAGUAG*CGAACG1
AUAGUAG*UGAACU1
GUAGUAG*CGAAAC1
GUAGUAG*CGAACC1
AUAGUAC*GGAACU1
GGAGUAC*GGAAAU1
UGAGUAU*AAAAAA1
GAAGUAUG*UGAAAC1
Non-Watson-Crick part of the motif
SequenceCounts
UAGUA*GACC4
UAGUA*GAAC4
GAGUA*GAAA2
CAGUA*GACC1
CAGUA*GAAC1
UAGUA*GAAA1
GAGUA*AAAA1
AAGUAU*GAAA1

Release history

Release3.33.43.53.63.73.83.93.103.11
Date2018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-10-19
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • 7x6 Sarcin-Ricin; G-bulge (10)
  • Sarcin-Ricin target in LSU H95; G-bulge (5)
    • Basepair signature
    cWW-tSH-tHH-cSH-tWH-tHS-cWW
    Heat map statistics
    Min 0.08 | Avg 0.26 | Max 0.44
    Help

    Coloring options:

    IL_4WF9_100:IL_4WF9_100 = 0IL_4WF9_100:IL_4Y4O_278 = 0.17IL_4WF9_100:IL_5J7L_346 = 0.1727IL_4WF9_100:IL_4IOA_096 = 0.1583IL_4WF9_100:IL_4V9F_019 = 0.226IL_4WF9_100:IL_4Y4O_185 = 0.3691IL_4WF9_100:IL_4V9F_007 = 0.3496IL_4WF9_100:IL_5J7L_251 = 0.3497IL_4WF9_100:IL_4V9F_049 = 0.4184IL_4WF9_100:IL_5TBW_061 = 0.4395IL_4WF9_100:IL_4V8P_222 = 0.4237IL_4WF9_100:IL_4V9F_092 = 0.3757IL_4WF9_100:IL_4V9F_106 = 0.3654IL_4WF9_100:IL_1NBS_007 = 0.3442IL_4WF9_100:IL_4V5O_131 = 0.4088IL_4Y4O_278:IL_4WF9_100 = 0.17IL_4Y4O_278:IL_4Y4O_278 = 0IL_4Y4O_278:IL_5J7L_346 = 0.097IL_4Y4O_278:IL_4IOA_096 = 0.1112IL_4Y4O_278:IL_4V9F_019 = 0.2318IL_4Y4O_278:IL_4Y4O_185 = 0.3797IL_4Y4O_278:IL_4V9F_007 = 0.3706IL_4Y4O_278:IL_5J7L_251 = 0.3539IL_4Y4O_278:IL_4V9F_049 = 0.4264IL_4Y4O_278:IL_5TBW_061 = 0.436IL_4Y4O_278:IL_4V8P_222 = 0.4258IL_4Y4O_278:IL_4V9F_092 = 0.3645IL_4Y4O_278:IL_4V9F_106 = 0.3236IL_4Y4O_278:IL_1NBS_007 = 0.3372IL_4Y4O_278:IL_4V5O_131 = 0.4212IL_5J7L_346:IL_4WF9_100 = 0.1727IL_5J7L_346:IL_4Y4O_278 = 0.097IL_5J7L_346:IL_5J7L_346 = 0IL_5J7L_346:IL_4IOA_096 = 0.0758IL_5J7L_346:IL_4V9F_019 = 0.184IL_5J7L_346:IL_4Y4O_185 = 0.341IL_5J7L_346:IL_4V9F_007 = 0.3259IL_5J7L_346:IL_5J7L_251 = 0.3154IL_5J7L_346:IL_4V9F_049 = 0.3844IL_5J7L_346:IL_5TBW_061 = 0.3849IL_5J7L_346:IL_4V8P_222 = 0.3745IL_5J7L_346:IL_4V9F_092 = 0.3135IL_5J7L_346:IL_4V9F_106 = 0.2888IL_5J7L_346:IL_1NBS_007 = 0.2922IL_5J7L_346:IL_4V5O_131 = 0.3856IL_4IOA_096:IL_4WF9_100 = 0.1583IL_4IOA_096:IL_4Y4O_278 = 0.1112IL_4IOA_096:IL_5J7L_346 = 0.0758IL_4IOA_096:IL_4IOA_096 = 0IL_4IOA_096:IL_4V9F_019 = 0.184IL_4IOA_096:IL_4Y4O_185 = 0.335IL_4IOA_096:IL_4V9F_007 = 0.3181IL_4IOA_096:IL_5J7L_251 = 0.3145IL_4IOA_096:IL_4V9F_049 = 0.3856IL_4IOA_096:IL_5TBW_061 = 0.3992IL_4IOA_096:IL_4V8P_222 = 0.3897IL_4IOA_096:IL_4V9F_092 = 0.3369IL_4IOA_096:IL_4V9F_106 = 0.3087IL_4IOA_096:IL_1NBS_007 = 0.2999IL_4IOA_096:IL_4V5O_131 = 0.3892IL_4V9F_019:IL_4WF9_100 = 0.226IL_4V9F_019:IL_4Y4O_278 = 0.2318IL_4V9F_019:IL_5J7L_346 = 0.184IL_4V9F_019:IL_4IOA_096 = 0.184IL_4V9F_019:IL_4V9F_019 = 0IL_4V9F_019:IL_4Y4O_185 = 0.2821IL_4V9F_019:IL_4V9F_007 = 0.2687IL_4V9F_019:IL_5J7L_251 = 0.2599IL_4V9F_019:IL_4V9F_049 = 0.3435IL_4V9F_019:IL_5TBW_061 = 0.3163IL_4V9F_019:IL_4V8P_222 = 0.301IL_4V9F_019:IL_4V9F_092 = 0.2799IL_4V9F_019:IL_4V9F_106 = 0.275IL_4V9F_019:IL_1NBS_007 = 0.2297IL_4V9F_019:IL_4V5O_131 = 0.3218IL_4Y4O_185:IL_4WF9_100 = 0.3691IL_4Y4O_185:IL_4Y4O_278 = 0.3797IL_4Y4O_185:IL_5J7L_346 = 0.341IL_4Y4O_185:IL_4IOA_096 = 0.335IL_4Y4O_185:IL_4V9F_019 = 0.2821IL_4Y4O_185:IL_4Y4O_185 = 0IL_4Y4O_185:IL_4V9F_007 = 0.1239IL_4Y4O_185:IL_5J7L_251 = 0.1225IL_4Y4O_185:IL_4V9F_049 = 0.2634IL_4Y4O_185:IL_5TBW_061 = 0.2494IL_4Y4O_185:IL_4V8P_222 = 0.2611IL_4Y4O_185:IL_4V9F_092 = 0.2589IL_4Y4O_185:IL_4V9F_106 = 0.2471IL_4Y4O_185:IL_1NBS_007 = 0.2275IL_4Y4O_185:IL_4V5O_131 = 0.2853IL_4V9F_007:IL_4WF9_100 = 0.3496IL_4V9F_007:IL_4Y4O_278 = 0.3706IL_4V9F_007:IL_5J7L_346 = 0.3259IL_4V9F_007:IL_4IOA_096 = 0.3181IL_4V9F_007:IL_4V9F_019 = 0.2687IL_4V9F_007:IL_4Y4O_185 = 0.1239IL_4V9F_007:IL_4V9F_007 = 0IL_4V9F_007:IL_5J7L_251 = 0.1159IL_4V9F_007:IL_4V9F_049 = 0.247IL_4V9F_007:IL_5TBW_061 = 0.2643IL_4V9F_007:IL_4V8P_222 = 0.268IL_4V9F_007:IL_4V9F_092 = 0.2589IL_4V9F_007:IL_4V9F_106 = 0.256IL_4V9F_007:IL_1NBS_007 = 0.2369IL_4V9F_007:IL_4V5O_131 = 0.2795IL_5J7L_251:IL_4WF9_100 = 0.3497IL_5J7L_251:IL_4Y4O_278 = 0.3539IL_5J7L_251:IL_5J7L_346 = 0.3154IL_5J7L_251:IL_4IOA_096 = 0.3145IL_5J7L_251:IL_4V9F_019 = 0.2599IL_5J7L_251:IL_4Y4O_185 = 0.1225IL_5J7L_251:IL_4V9F_007 = 0.1159IL_5J7L_251:IL_5J7L_251 = 0IL_5J7L_251:IL_4V9F_049 = 0.2072IL_5J7L_251:IL_5TBW_061 = 0.222IL_5J7L_251:IL_4V8P_222 = 0.2367IL_5J7L_251:IL_4V9F_092 = 0.2133IL_5J7L_251:IL_4V9F_106 = 0.2048IL_5J7L_251:IL_1NBS_007 = 0.2121IL_5J7L_251:IL_4V5O_131 = 0.2473IL_4V9F_049:IL_4WF9_100 = 0.4184IL_4V9F_049:IL_4Y4O_278 = 0.4264IL_4V9F_049:IL_5J7L_346 = 0.3844IL_4V9F_049:IL_4IOA_096 = 0.3856IL_4V9F_049:IL_4V9F_019 = 0.3435IL_4V9F_049:IL_4Y4O_185 = 0.2634IL_4V9F_049:IL_4V9F_007 = 0.247IL_4V9F_049:IL_5J7L_251 = 0.2072IL_4V9F_049:IL_4V9F_049 = 0IL_4V9F_049:IL_5TBW_061 = 0.2043IL_4V9F_049:IL_4V8P_222 = 0.2507IL_4V9F_049:IL_4V9F_092 = 0.2001IL_4V9F_049:IL_4V9F_106 = 0.2513IL_4V9F_049:IL_1NBS_007 = 0.2546IL_4V9F_049:IL_4V5O_131 = 0.2525IL_5TBW_061:IL_4WF9_100 = 0.4395IL_5TBW_061:IL_4Y4O_278 = 0.436IL_5TBW_061:IL_5J7L_346 = 0.3849IL_5TBW_061:IL_4IOA_096 = 0.3992IL_5TBW_061:IL_4V9F_019 = 0.3163IL_5TBW_061:IL_4Y4O_185 = 0.2494IL_5TBW_061:IL_4V9F_007 = 0.2643IL_5TBW_061:IL_5J7L_251 = 0.222IL_5TBW_061:IL_4V9F_049 = 0.2043IL_5TBW_061:IL_5TBW_061 = 0IL_5TBW_061:IL_4V8P_222 = 0.0993IL_5TBW_061:IL_4V9F_092 = 0.1472IL_5TBW_061:IL_4V9F_106 = 0.2309IL_5TBW_061:IL_1NBS_007 = 0.2147IL_5TBW_061:IL_4V5O_131 = 0.2916IL_4V8P_222:IL_4WF9_100 = 0.4237IL_4V8P_222:IL_4Y4O_278 = 0.4258IL_4V8P_222:IL_5J7L_346 = 0.3745IL_4V8P_222:IL_4IOA_096 = 0.3897IL_4V8P_222:IL_4V9F_019 = 0.301IL_4V8P_222:IL_4Y4O_185 = 0.2611IL_4V8P_222:IL_4V9F_007 = 0.268IL_4V8P_222:IL_5J7L_251 = 0.2367IL_4V8P_222:IL_4V9F_049 = 0.2507IL_4V8P_222:IL_5TBW_061 = 0.0993IL_4V8P_222:IL_4V8P_222 = 0IL_4V8P_222:IL_4V9F_092 = 0.162IL_4V8P_222:IL_4V9F_106 = 0.2482IL_4V8P_222:IL_1NBS_007 = 0.2141IL_4V8P_222:IL_4V5O_131 = 0.3052IL_4V9F_092:IL_4WF9_100 = 0.3757IL_4V9F_092:IL_4Y4O_278 = 0.3645IL_4V9F_092:IL_5J7L_346 = 0.3135IL_4V9F_092:IL_4IOA_096 = 0.3369IL_4V9F_092:IL_4V9F_019 = 0.2799IL_4V9F_092:IL_4Y4O_185 = 0.2589IL_4V9F_092:IL_4V9F_007 = 0.2589IL_4V9F_092:IL_5J7L_251 = 0.2133IL_4V9F_092:IL_4V9F_049 = 0.2001IL_4V9F_092:IL_5TBW_061 = 0.1472IL_4V9F_092:IL_4V8P_222 = 0.162IL_4V9F_092:IL_4V9F_092 = 0IL_4V9F_092:IL_4V9F_106 = 0.1775IL_4V9F_092:IL_1NBS_007 = 0.1777IL_4V9F_092:IL_4V5O_131 = 0.2698IL_4V9F_106:IL_4WF9_100 = 0.3654IL_4V9F_106:IL_4Y4O_278 = 0.3236IL_4V9F_106:IL_5J7L_346 = 0.2888IL_4V9F_106:IL_4IOA_096 = 0.3087IL_4V9F_106:IL_4V9F_019 = 0.275IL_4V9F_106:IL_4Y4O_185 = 0.2471IL_4V9F_106:IL_4V9F_007 = 0.256IL_4V9F_106:IL_5J7L_251 = 0.2048IL_4V9F_106:IL_4V9F_049 = 0.2513IL_4V9F_106:IL_5TBW_061 = 0.2309IL_4V9F_106:IL_4V8P_222 = 0.2482IL_4V9F_106:IL_4V9F_092 = 0.1775IL_4V9F_106:IL_4V9F_106 = 0IL_4V9F_106:IL_1NBS_007 = 0.1591IL_4V9F_106:IL_4V5O_131 = 0.2212IL_1NBS_007:IL_4WF9_100 = 0.3442IL_1NBS_007:IL_4Y4O_278 = 0.3372IL_1NBS_007:IL_5J7L_346 = 0.2922IL_1NBS_007:IL_4IOA_096 = 0.2999IL_1NBS_007:IL_4V9F_019 = 0.2297IL_1NBS_007:IL_4Y4O_185 = 0.2275IL_1NBS_007:IL_4V9F_007 = 0.2369IL_1NBS_007:IL_5J7L_251 = 0.2121IL_1NBS_007:IL_4V9F_049 = 0.2546IL_1NBS_007:IL_5TBW_061 = 0.2147IL_1NBS_007:IL_4V8P_222 = 0.2141IL_1NBS_007:IL_4V9F_092 = 0.1777IL_1NBS_007:IL_4V9F_106 = 0.1591IL_1NBS_007:IL_1NBS_007 = 0IL_1NBS_007:IL_4V5O_131 = 0.1987IL_4V5O_131:IL_4WF9_100 = 0.4088IL_4V5O_131:IL_4Y4O_278 = 0.4212IL_4V5O_131:IL_5J7L_346 = 0.3856IL_4V5O_131:IL_4IOA_096 = 0.3892IL_4V5O_131:IL_4V9F_019 = 0.3218IL_4V5O_131:IL_4Y4O_185 = 0.2853IL_4V5O_131:IL_4V9F_007 = 0.2795IL_4V5O_131:IL_5J7L_251 = 0.2473IL_4V5O_131:IL_4V9F_049 = 0.2525IL_4V5O_131:IL_5TBW_061 = 0.2916IL_4V5O_131:IL_4V8P_222 = 0.3052IL_4V5O_131:IL_4V9F_092 = 0.2698IL_4V5O_131:IL_4V9F_106 = 0.2212IL_4V5O_131:IL_1NBS_007 = 0.1987IL_4V5O_131:IL_4V5O_131 = 0IL_4WF9_100IL_4Y4O_278IL_5J7L_346IL_4IOA_096IL_4V9F_019IL_4Y4O_185IL_4V9F_007IL_5J7L_251IL_4V9F_049IL_5TBW_061IL_4V8P_222IL_4V9F_092IL_4V9F_106IL_1NBS_007IL_4V5O_131Discrepancy0.000.100.200.300.40
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