IL_4V8P_228

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GGUA*UUUC

Length

8 nucleotides

Bulged bases

4V8P|1|D1|U|1845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09732.1

Basepair signature

cWW-cWW-R-cWW

Number of instances in this motif group

4

Unit IDs

4V8P|1|D1|G|1648
4V8P|1|D1|G|1649
4V8P|1|D1|U|1650
4V8P|1|D1|A|1651
*
4V8P|1|D1|U|1843
4V8P|1|D1|U|1844
4V8P|1|D1|U|1845
4V8P|1|D1|C|1846

Current chains

Chain D1

26S RRNA

Nearby chains

Chain DL

RPL34

Chain DN

RPL27

Chain DP

RPL38