Motif IL_09732.1 Version IL_09732.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5BTP_005 | 5BTP | 0.1288 | 8 | B | ZMP/ZTP riboswitch | C | 15 | U | 16 | G | 25 | * | C | 38 | A | 39 | U | 40 | G | 41 | cWW | cwW | cWW |
| 2 | IL_4ZNP_003 | 4ZNP | 0.0000 | 9 | A | ZMP/ZTP riboswitch | C | 12 | U | 13 | G | 23 | * | C | 34 | G | 35 | U | 36 | G | 37 | cWW | cwW | cWW |
| 3 | IL_4V8P_228 | 4V8P | 0.6111 | 1 | D1 | LSU rRNA | U | 1843 | U | 1844 | C | 1846 | * | G | 1648 | G | 1649 | U | 1650 | A | 1651 | cWW | cwW | cWW |
| 4 | IL_4V88_400 | 4V88 | 0.8738 | 0 | A6 | SSU rRNA | U | 283 | G | 284 | G | 285 | * | C | 270 | A | 271 | U | 272 | G | 273 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGACGGAACG*CAUG | 1 |
| CUGGCGGAUUAG*CGUG | 1 |
| UUUC*GGUA | 1 |
| UGG*CAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGACGGAAC*AU | 1 |
| UGGCGGAUUA*GU | 1 |
| UU*GU | 1 |
| G*AU | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-R-cWW
- Heat map statistics
- Min 0.13 | Avg 0.49 | Max 0.90
Coloring options: