IL_4V8P_235

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UGAAAUU*AGAGAUA

Length

14 nucleotides

Bulged bases

4V8P|1|D1|U|1740, 4V8P|1|D1|A|1753

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn

Broad Annotation

Kink-turn

Motif group

IL_44060.2

Basepair signature

cWW-tSH-tSH-tHS-tSS-L-R-cWW

Number of instances in this motif group

3

Unit IDs

4V8P|1|D1|U|1735
4V8P|1|D1|G|1736
4V8P|1|D1|A|1737
4V8P|1|D1|A|1738
4V8P|1|D1|A|1739
4V8P|1|D1|U|1740
4V8P|1|D1|U|1741
*
4V8P|1|D1|A|1751
4V8P|1|D1|G|1752
4V8P|1|D1|A|1753
4V8P|1|D1|G|1754
4V8P|1|D1|A|1755
4V8P|1|D1|U|1756
4V8P|1|D1|A|1757

Current chains

Chain D1

26S RRNA

Nearby chains

Chain CO

RPL19

Chain CY

RPL37A

Chain DG

RPL30

Chain DL

RPL34

Chain DN

RPL27