Motif IL_44060.2 Version IL_44060.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-7 | 4-9 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_073 | 5TBW | 0.3997 | 2 | Kink-turn | 1 | LSU rRNA | C | 1711 | G | 1712 | G | 1713 | A | 1714 | A | 1715 | U | 1717 | * | G | 1727 | G | 1728 | G | 1730 | A | 1731 | U | 1732 | G | 1733 | cWW | tSH | ntSH | tSs | tHS | cWW |
| 2 | IL_4V8P_235 | 4V8P | 0.0000 | 2 | Kink-turn | D1 | LSU rRNA | U | 1735 | G | 1736 | A | 1737 | A | 1738 | A | 1739 | U | 1741 | * | A | 1751 | G | 1752 | G | 1754 | A | 1755 | U | 1756 | A | 1757 | cWW | tSH | ntSH | tSs | tHS | cWW |
| 3 | IL_4V9F_058 | 4V9F | 0.6070 | 1 | Kink-turn | 0 | LSU rRNA | U | 1587 | G | 1588 | G | 1589 | A | 1590 | A | 1591 | G | 1592 | * | C | 1602 | A | 1603 | G | 1605 | A | 1606 | A | 1607 | G | 1608 | cWW | tSH | tSH | tSs | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGAAUU*GGAGAUG | 1 |
| UGAAAUU*AGAGAUA | 1 |
| UGGAAG*CAGGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAAU*GAGAU | 1 |
| GAAAU*GAGAU | 1 |
| GGAA*AGGAA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn (3)
- Basepair signature
- cWW-tSH-tSH-tHS-tSS-L-R-cWW
- Heat map statistics
- Min 0.40 | Avg 0.36 | Max 0.63
Coloring options: