IL_4V8P_240

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

4V8P|1|D1|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66584.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4V8P|1|D1|C|1942
4V8P|1|D1|G|1943
4V8P|1|D1|U|1944
4V8P|1|D1|A|1945
4V8P|1|D1|A|1946
4V8P|1|D1|C|1947
*
4V8P|1|D1|G|1952
4V8P|1|D1|G|1953
4V8P|1|D1|A|1954
4V8P|1|D1|U|1955
4V8P|1|D1|A|1956
4V8P|1|D1|A|1957
4V8P|1|D1|G|1958

Current chains

Chain D1

26S RRNA

Nearby chains

Chain CO

RPL19

Chain CY

RPL37A