#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4 5 6break 7 8 9 10 11 121-122-113-104-95-86-7
1 IL_4Y4O_2414Y4O0.09421tSH-tSH-tHH-tHS (H)2A LSU rRNAC1686G1687U1688A1689A1690C1691*G1696G1697A1698A1700A1701G1702cWWtSHtHHtHScWW
2 IL_5J7L_3085J7L0.09521tSH-tSH-tHH-tHSDA LSU rRNAC1686G1687U1688A1689A1690C1691*G1696G1697A1698A1700A1701G1702cWWtSHtHHtHScWW
3 IL_4IOA_0634IOA0.06531tSH-tSH-tHH-tHS (H)X LSU rRNAC1703G1704U1705A1706A1707C1708*G1713A1714A1715A1717A1718G1719cWWtSHtHHtHScWW
4 IL_5TBW_0785TBW0.00001tSH-tSH-tHH-tHS1 LSU rRNAC1918G1919U1920A1921A1922C1923*G1928G1929A1930A1932A1933G1934cWWtSHtHHtHScWW
5 IL_4V8P_2404V8P0.13641D1 LSU rRNAC1942G1943U1944A1945A1946C1947*G1952G1953A1954A1956A1957G1958cWWtSHtHHtHScWW
6 IL_4V9F_0634V9F0.12601tSH-tSH-tHH-tHS0 LSU rRNAC1764G1765U1766A1767C1768C1769*G1774A1775A1776A1778A1779G1780cWWtSHtHHtHScWW
7 IL_3FTE_0013FTE0.57050Quadruple shearedD+CRNA (22-mer)G1515G1516G1517A1518A1519C1520*G1515G1516G1517A1518A1519C1520cWWtSHntSHtHScWW
8 IL_3R9W_0013R9W0.64820Quadruple shearedBRNA301G1515||||2_455G1516||||2_455G1517||||2_455A1518||||2_455A1519||||2_455C1520||||2_455*G1515G1516G1517A1518A1519C1520cWWtSHntSHntHStHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGUAAC*GGAGAAG2
CGUAAC*GGAUAAG2
GGGAAC*GGGAAC2
CGUAAC*GAAGAAG1
CGUACC*GAAGAAG1
Non-Watson-Crick part of the motif
SequenceCounts
GUAA*GAGAA2
GUAA*GAUAA2
GGAA*GGAA2
GUAA*AAGAA1
GUAC*AAGAA1

Release history

Release3.33.43.53.63.73.83.93.103.11
Date2018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-10-19
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tSH-tSH-tHH-tHS (3)
  • Quadruple sheared (2)
  • tSH-tSH-tHH-tHS (H) (2)
  • (1)
  • Basepair signature
    cWW-tSH-tSH-tHH-tHS-cWW
    Heat map statistics
    Min 0.07 | Avg 0.29 | Max 0.67
    Help

    Coloring options:

    IL_4Y4O_241:IL_4Y4O_241 = 0IL_4Y4O_241:IL_5J7L_308 = 0.0722IL_4Y4O_241:IL_4IOA_063 = 0.0938IL_4Y4O_241:IL_5TBW_078 = 0.0942IL_4Y4O_241:IL_4V8P_240 = 0.1475IL_4Y4O_241:IL_4V9F_063 = 0.1238IL_4Y4O_241:IL_3FTE_001 = 0.5621IL_4Y4O_241:IL_3R9W_001 = 0.654IL_5J7L_308:IL_4Y4O_241 = 0.0722IL_5J7L_308:IL_5J7L_308 = 0IL_5J7L_308:IL_4IOA_063 = 0.0898IL_5J7L_308:IL_5TBW_078 = 0.0952IL_5J7L_308:IL_4V8P_240 = 0.1733IL_5J7L_308:IL_4V9F_063 = 0.1253IL_5J7L_308:IL_3FTE_001 = 0.5698IL_5J7L_308:IL_3R9W_001 = 0.6663IL_4IOA_063:IL_4Y4O_241 = 0.0938IL_4IOA_063:IL_5J7L_308 = 0.0898IL_4IOA_063:IL_4IOA_063 = 0IL_4IOA_063:IL_5TBW_078 = 0.0653IL_4IOA_063:IL_4V8P_240 = 0.1638IL_4IOA_063:IL_4V9F_063 = 0.1415IL_4IOA_063:IL_3FTE_001 = 0.5735IL_4IOA_063:IL_3R9W_001 = 0.6555IL_5TBW_078:IL_4Y4O_241 = 0.0942IL_5TBW_078:IL_5J7L_308 = 0.0952IL_5TBW_078:IL_4IOA_063 = 0.0653IL_5TBW_078:IL_5TBW_078 = 0IL_5TBW_078:IL_4V8P_240 = 0.1364IL_5TBW_078:IL_4V9F_063 = 0.126IL_5TBW_078:IL_3FTE_001 = 0.5705IL_5TBW_078:IL_3R9W_001 = 0.6482IL_4V8P_240:IL_4Y4O_241 = 0.1475IL_4V8P_240:IL_5J7L_308 = 0.1733IL_4V8P_240:IL_4IOA_063 = 0.1638IL_4V8P_240:IL_5TBW_078 = 0.1364IL_4V8P_240:IL_4V8P_240 = 0IL_4V8P_240:IL_4V9F_063 = 0.1231IL_4V8P_240:IL_3FTE_001 = 0.5394IL_4V8P_240:IL_3R9W_001 = 0.6161IL_4V9F_063:IL_4Y4O_241 = 0.1238IL_4V9F_063:IL_5J7L_308 = 0.1253IL_4V9F_063:IL_4IOA_063 = 0.1415IL_4V9F_063:IL_5TBW_078 = 0.126IL_4V9F_063:IL_4V8P_240 = 0.1231IL_4V9F_063:IL_4V9F_063 = 0IL_4V9F_063:IL_3FTE_001 = 0.5202IL_4V9F_063:IL_3R9W_001 = 0.6084IL_3FTE_001:IL_4Y4O_241 = 0.5621IL_3FTE_001:IL_5J7L_308 = 0.5698IL_3FTE_001:IL_4IOA_063 = 0.5735IL_3FTE_001:IL_5TBW_078 = 0.5705IL_3FTE_001:IL_4V8P_240 = 0.5394IL_3FTE_001:IL_4V9F_063 = 0.5202IL_3FTE_001:IL_3FTE_001 = 0IL_3FTE_001:IL_3R9W_001 = 0.331IL_3R9W_001:IL_4Y4O_241 = 0.654IL_3R9W_001:IL_5J7L_308 = 0.6663IL_3R9W_001:IL_4IOA_063 = 0.6555IL_3R9W_001:IL_5TBW_078 = 0.6482IL_3R9W_001:IL_4V8P_240 = 0.6161IL_3R9W_001:IL_4V9F_063 = 0.6084IL_3R9W_001:IL_3FTE_001 = 0.331IL_3R9W_001:IL_3R9W_001 = 0IL_4Y4O_241IL_5J7L_308IL_4IOA_063IL_5TBW_078IL_4V8P_240IL_4V9F_063IL_3FTE_001IL_3R9W_001Discrepancy0.000.100.200.300.400.500.60
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