3D structure

PDB id
4V8P (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
Experimental method
X-RAY DIFFRACTION
Resolution
3.52 Å

Loop

Sequence
GGAAG*UGAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
UAA/GAN
Broad Annotation
UAA/GAN
Motif group
IL_53523.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
23

Unit IDs

4V8P|1|D1|G|3195
4V8P|1|D1|G|3196
4V8P|1|D1|A|3197
4V8P|1|D1|A|3198
4V8P|1|D1|G|3199
*
4V8P|1|D1|U|3212
4V8P|1|D1|G|3213
4V8P|1|D1|A|3214
4V8P|1|D1|C|3215

Current chains

Chain D1
26S RRNA

Nearby chains

Chain CI
60S RIBOSOMAL PROTEIN L13A

Coloring options:

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