IL_53523.2

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9	1-9	2-8	3-7	4-7	5-6
1	IL_5TBW_118	5TBW	0.5514	2	UAA/GAN related	1	LSU rRNA	C	3084	G	3085	A	3086	A	3087	G	3088	*	U	3054	U	3055	U	3057	G	3059	cWW	ntSW			cWW
2	IL_4V9F_094	4V9F	0.4038	1	UAA/GAN	0	LSU rRNA	G	2754	G	2755	U	2756	A	2757	G	2758	*	U	2724	G	2725	A	2727	C	2728	cWW			tHS	cWW
3	IL_4Y4O_236	4Y4O	0.5576	0	UAA/GAN	2A	LSU rRNA	A	1469	G	1470	A	1471	A	1472	G	1473	*	U	1518	G	1519	G	1520	U	1523	cWW			tHS	cWW
4	IL_4V8P_284	4V8P	0.5383	0	UAA/GAN	D1	LSU rRNA	G	3195	G	3196	A	3197	A	3198	G	3199	*	U	3212	G	3213	A	3214	C	3215	cWW			ntHS	cWW
5	IL_4WF9_075	4WF9	0.5530	0	UAA/GAN	X	LSU rRNA	C	1901	G	1902	A	1903	A	1904	G	1905	*	U	1891	U	1892	A	1893	G	1894	cWW	ntSH	ntHW		cWW
6	IL_5TBW_023	5TBW	0.4393	0	UAA/GAN	1	LSU rRNA	U	741	G	742	C	743	A	744	C	745	*	G	725	G	726	G	727	G	728	cWW	ntSH		tHS	cWW
7	IL_4V5O_089	4V5O	0.5551	1	UAA/GAN	BA	SSU rRNA	C	78	G	79	A	80	A	81	A	82	*	U	63	U	64	A	66	G	67	cWW	ntSH	ntHW		cWW
8	IL_2XXA_007	2XXA	0.2600	3	UAA/GAN	F	SSRP RNA	A	62	U	63	A	64	A	65	G	66	*	C	31	G	32	A	33	U	37	cWW	ntWH		tHS	cWW
9	IL_4V8P_225	4V8P	0.2303	2	UAA/GAN	D1	LSU rRNA	C	1558	U	1559	A	1560	A	1561	G	1562	*	C	1610	A	1611	A	1612	G	1615	cWW	tWH		tHS	cWW
10	IL_5TBW_063	5TBW	0.2062	2	UAA/GAN	1	LSU rRNA	C	1532	U	1533	A	1534	A	1535	G	1536	*	C	1585	G	1586	A	1587	G	1590	cWW	tWH		tHS	cWW
11	IL_4V9F_052	4V9F	0.1896	3	UAA/GAN	0	LSU rRNA	C	1456	U	1457	A	1458	A	1459	G	1460	*	C	1483	G	1484	A	1485	G	1489	cWW	tWH		tHS	cWW
12	IL_4Y4O_228	4Y4O	0.1396	1	UAA/GAN	2A	LSU rRNA	C	1351	U	1352	A	1353	A	1354	G	1355	*	C	1376	G	1377	A	1378	G	1380	cWW	tWH		tHS	cWW
13	IL_4Y4O_231	4Y4O	0.0974	1	UAA/GAN	2A	LSU rRNA	C	1577	U	1578	A	1579	A	1580	G	1581	*	C	1417	G	1418	A	1419	G	1421	cWW	tWH		tHS	cWW
14	IL_5J7L_295	5J7L	0.0000	1	UAA/GAN	DA	LSU rRNA	C	1577	U	1578	A	1579	A	1580	G	1581	*	C	1417	G	1418	A	1419	G	1421	cWW	tWH		tHS	cWW
15	IL_4V9F_037	4V9F	0.1444	1	UAA/GAN	0	LSU rRNA	U	1095	U	1096	A	1097	A	1098	G	1099	*	C	1257	G	1258	A	1259	A	1261	cWW	tWH		tHS	cWW
16	IL_4Y4O_213	4Y4O	0.2035	1	UAA/GAN	2A	LSU rRNA	C	998	U	999	A	1000	A	1001	G	1002	*	C	1153	G	1154	A	1155	G	1157	cWW	tWH		tHS	cWW
17	IL_4WF9_036	4WF9	0.1879	1	UAA/GAN	X	LSU rRNA	C	1042	U	1043	A	1044	A	1045	G	1046	*	C	1197	G	1198	A	1199	G	1201	cWW	tWH		tHS	cWW
18	IL_5J7L_277	5J7L	0.1540	1	UAA/GAN	DA	LSU rRNA	C	998	U	999	A	1000	A	1001	G	1002	*	C	1153	G	1154	A	1155	G	1157	cWW	tWH		tHS	cWW
19	IL_4IOA_032	4IOA	0.1695	1	UAA/GAN	X	LSU rRNA	C	1009	U	1010	A	1011	A	1012	G	1013	*	C	1164	G	1165	A	1166	G	1168	cWW	tWH		tHS	cWW
20	IL_5TBW_120	5TBW	0.2149	1	UAA/GAN	1	LSU rRNA	A	3103	U	3104	U	3105	A	3106	U	3107	*	A	3127	G	3128	A	3129	U	3131	cWW	tWH		tHS	cWW
21	IL_4V8P_280	4V8P	0.2496	1	UAA/GAN	D1	LSU rRNA	A	3092	U	3093	U	3094	A	3095	U	3096	*	A	3116	G	3117	A	3118	U	3120	cWW	ntWH		tHS	cWW
22	IL_5TBW_048	5TBW	0.2648	1	UAA/GAN	1	LSU rRNA	U	1167	U	1168	A	1169	A	1170	G	1171	*	C	1328	U	1329	A	1330	A	1332	cWW	tWH	ntHW		cWW
23	IL_4IOA_053	4IOA	0.3519	1	UAA/GAN	X	LSU rRNA	C	1593	U	1594	A	1595	A	1596	A	1597	*	U	1431	G	1432	A	1433	G	1435	cWW	tWH			cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUAAG*CGAAG	6
AUUAU*AGAAU	2
CGAAG*UUUUUG	1
GGUAG*UGUAC	1
AGAAG*UGGU	1
GGAAG*UGAC	1
CGAAG*UUAG	1
UGCAC*GGGG	1
CGAAA*UUCAG	1
AUAAG*CGAACCU	1
CUAAG*CAAAAG	1
CUAAG*CGAAAG	1
CUAAG*CGAAAUG	1
CUAAG*CGAUG	1
UUAAG*CGAGA	1
UUAAG*CUAUA	1
CUAAA*UGAUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAA*GAA	6
UAA*GAU	2
UUA*GAA	2
GAA*UUUU	1
GUA*GUA	1
GAA*GG	1
GAA*GA	1
GAA*UA	1
GCA*GG	1
GAA*UCA	1
UAA*GAACC	1
UAA*AAAA	1
UAA*GAAA	1
UAA*GAAAU	1
UAA*GAG	1
UAA*UAU	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_53523.2 Version IL_53523.2 of this group appears in releases 3.3 to 3.11 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_53523.2 Version IL_53523.2 of this group appears in releases 3.3 to 3.11

Download

Csv

Json