IL_4V8P_301
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GUUAGUAC*GGAAGUC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_301 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.3202
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4V8P|1|E3|G|71
4V8P|1|E3|U|72
4V8P|1|E3|U|73
4V8P|1|E3|A|74
4V8P|1|E3|G|75
4V8P|1|E3|U|76
4V8P|1|E3|A|77
4V8P|1|E3|C|78
*
4V8P|1|E3|G|98
4V8P|1|E3|G|99
4V8P|1|E3|A|100
4V8P|1|E3|A|101
4V8P|1|E3|G|102
4V8P|1|E3|U|103
4V8P|1|E3|C|104
Current chains
- Chain E3
- 5S RRNA
Nearby chains
- Chain EH
- 60S RIBOSOMAL PROTEIN L10
- Chain EM
- 60S RIBOSOMAL PROTEIN L5
- Chain EP
- 60S RIBOSOMAL PROTEIN L21
- Chain EV
- 60S RIBOSOMAL PROTEIN L7
- Chain F1
- Large subunit ribosomal RNA; LSU rRNA
- Chain FX
- RPL18A
Coloring options: