IL_4V8P_302
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GGUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 4V8P|1|E3|U|84
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_302 not in the Motif Atlas
- Homologous match to IL_5TBW_378
- Geometric discrepancy: 0.3439
- The information below is about IL_5TBW_378
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
4V8P|1|E3|G|82
4V8P|1|E3|G|83
4V8P|1|E3|U|84
4V8P|1|E3|G|85
*
4V8P|1|E3|C|92
4V8P|1|E3|G|93
4V8P|1|E3|C|94
Current chains
- Chain E3
- 5S RRNA
Nearby chains
- Chain EH
- 60S RIBOSOMAL PROTEIN L10
- Chain EV
- 60S RIBOSOMAL PROTEIN L7
- Chain F1
- Large subunit ribosomal RNA; LSU rRNA
- Chain FX
- RPL18A
Coloring options: