IL_4V8P_353

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UUAC*GA

Length

6 nucleotides

Bulged bases

4V8P|1|F1|U|1102, 4V8P|1|F1|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_353 not in the Motif Atlas

Geometric match to IL_5WLH_001

Geometric discrepancy: 0.1816

The information below is about IL_5WLH_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

4V8P|1|F1|U|1101
4V8P|1|F1|U|1102
4V8P|1|F1|A|1103
4V8P|1|F1|C|1104
*
4V8P|1|F1|G|1111
4V8P|1|F1|A|1112

Current chains

Chain F1

26S RRNA

Nearby chains

Chain EM

60S RIBOSOMAL PROTEIN L5

Chain EP

60S RIBOSOMAL PROTEIN L21

Chain FT

RPL29