IL_4V8P_380

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69914.1

Basepair signature

cWW-L-L-L-tHS-L-R-cWW

Number of instances in this motif group

8

Unit IDs

4V8P|1|F1|A|1907
4V8P|1|F1|A|1908
4V8P|1|F1|C|1909
4V8P|1|F1|A|1910
4V8P|1|F1|A|1911
4V8P|1|F1|U|1912
4V8P|1|F1|G|1913
*
4V8P|1|F1|C|2341
4V8P|1|F1|U|2342
4V8P|1|F1|A|2343
4V8P|1|F1|U|2344

Current chains

Chain F1

26S RRNA

Nearby chains

Chain EB

RIBOSOMAL PROTEIN L3

Chain EQ

RPL17

Chain EW

60S RIBOSOMAL PROTEIN L31