IL_4V8P_405

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UUGA*UACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

116

Unit IDs

4V8P|1|F1|U|2707
4V8P|1|F1|U|2708
4V8P|1|F1|G|2709
4V8P|1|F1|A|2710
*
4V8P|1|F1|U|2724
4V8P|1|F1|A|2725
4V8P|1|F1|C|2726
4V8P|1|F1|A|2727

Current chains

Chain F1

26S RRNA

Nearby chains

Chain EM

60S RIBOSOMAL PROTEIN L5

Chain EN

RPL18

Chain EP

60S RIBOSOMAL PROTEIN L21

Chain FC

60S RIBOSOMAL PROTEIN L36A

Chain FT

RPL29