IL_4V8P_414

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

4V8P|1|F1|G|2933, 4V8P|1|F1|A|2934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_414 not in the Motif Atlas

Homologous match to IL_5TBW_108

Geometric discrepancy: 0.1205

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V8P|1|F1|C|2867
4V8P|1|F1|U|2868
4V8P|1|F1|C|2869
*
4V8P|1|F1|G|2931
4V8P|1|F1|U|2932
4V8P|1|F1|G|2933
4V8P|1|F1|A|2934
4V8P|1|F1|G|2935

Current chains

Chain F1

26S RRNA

Nearby chains

Chain EB

RIBOSOMAL PROTEIN L3

Chain EJ

RPL23