IL_4V8P_419

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CGAC*GGAAAG

Length

10 nucleotides

Bulged bases

4V8P|1|F1|A|3130, 4V8P|1|F1|A|3132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75779.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

55

Unit IDs

4V8P|1|F1|C|2993
4V8P|1|F1|G|2994
4V8P|1|F1|A|2995
4V8P|1|F1|C|2996
*
4V8P|1|F1|G|3128
4V8P|1|F1|G|3129
4V8P|1|F1|A|3130
4V8P|1|F1|A|3131
4V8P|1|F1|A|3132
4V8P|1|F1|G|3133

Current chains

Chain F1

26S RRNA

Nearby chains

Chain E2

5.8S ribosomal RNA; 5.8S rRNA

Chain EB

RIBOSOMAL PROTEIN L3

Chain EI

60S RIBOSOMAL PROTEIN L13A