IL_4V8P_444
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- AUCCC*GAACU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_24024.1
- Basepair signature
- cWW-cSH-L-cWS-tSW-R-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
4V8P|1|G3|A|32
4V8P|1|G3|U|33
4V8P|1|G3|C|34
4V8P|1|G3|C|35
4V8P|1|G3|C|36
*
4V8P|1|G3|G|41
4V8P|1|G3|A|42
4V8P|1|G3|A|43
4V8P|1|G3|C|44
4V8P|1|G3|U|45
Current chains
- Chain G3
- 5S RRNA
Nearby chains
- Chain GD
- 60S RIBOSOMAL PROTEIN L11
- Chain GM
- 60S RIBOSOMAL PROTEIN L5
- Chain H1
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: