IL_4V8P_449
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CCCAGUAA*UGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_449 not in the Motif Atlas
- Homologous match to IL_8C3A_006
- Geometric discrepancy: 0.1564
- The information below is about IL_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V8P|1|H1|C|80
4V8P|1|H1|C|81
4V8P|1|H1|C|82
4V8P|1|H1|A|83
4V8P|1|H1|G|84
4V8P|1|H1|U|85
4V8P|1|H1|A|86
4V8P|1|H1|A|87
*
4V8P|1|H1|U|95
4V8P|1|H1|G|96
4V8P|1|H1|A|97
4V8P|1|H1|A|98
4V8P|1|H1|C|99
4V8P|1|H1|A|100
4V8P|1|H1|G|101
Current chains
- Chain H1
- 26S RRNA
Nearby chains
- Chain GK
- 60S RIBOSOMAL PROTEIN L27A
- Chain GL
- RIBOSOMAL PROTEIN L15
- Chain GN
- RPL18
- Chain HC
- 60S RIBOSOMAL PROTEIN L36A
- Chain HU
- RPL13
Coloring options: