IL_4V8P_472

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UGAG*CAAAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_472 not in the Motif Atlas

Geometric match to IL_3IGI_009

Geometric discrepancy: 0.1973

The information below is about IL_3IGI_009

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.6

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

4V8P|1|H1|U|571
4V8P|1|H1|G|572
4V8P|1|H1|A|573
4V8P|1|H1|G|574
*
4V8P|1|H1|C|594
4V8P|1|H1|A|595
4V8P|1|H1|A|596
4V8P|1|H1|A|597
4V8P|1|H1|A|598

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GC

RPL4

Chain HF

RPL14

Chain HX

RPL18A