IL_4V8P_496

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GACU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_496 not in the Motif Atlas

Geometric match to IL_4R4V_001

Geometric discrepancy: 0.3416

The information below is about IL_4R4V_001

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

4V8P|1|H1|G|1039
4V8P|1|H1|A|1040
4V8P|1|H1|C|1041
4V8P|1|H1|U|1042
*
4V8P|1|H1|A|1062
4V8P|1|H1|C|1063

Current chains

Chain H1

26S RRNA

Nearby chains

Chain AG

RPL30

Chain AN

RPL27

Chain GH

60S RIBOSOMAL PROTEIN L10

Chain GM

60S RIBOSOMAL PROTEIN L5