IL_4V8P_513
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GGUU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_513 not in the Motif Atlas
- Geometric match to IL_4V9F_050
- Geometric discrepancy: 0.0941
- The information below is about IL_4V9F_050
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_50694.7
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 27
Unit IDs
4V8P|1|H1|G|1518
4V8P|1|H1|G|1519
4V8P|1|H1|U|1520
4V8P|1|H1|U|1521
*
4V8P|1|H1|A|1859
4V8P|1|H1|C|1860
Current chains
- Chain H1
- 26S RRNA
Nearby chains
- Chain GR
- RPL23A
- Chain HA
- RIBOSOMAL PROTEIN L37
- Chain HB
- RPL39
- Chain HL
- RPL34
Coloring options: