IL_4V8P_514

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AGAAC*GUU

Length

8 nucleotides

Bulged bases

4V8P|1|H1|U|1540

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_514 not in the Motif Atlas

Geometric match to IL_4LFB_037

Geometric discrepancy: 0.3929

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V8P|1|H1|A|1527
4V8P|1|H1|G|1528
4V8P|1|H1|A|1529
4V8P|1|H1|A|1530
4V8P|1|H1|C|1531
*
4V8P|1|H1|G|1539
4V8P|1|H1|U|1540
4V8P|1|H1|U|1541

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GO

RPL19

Chain GQ

RPL17

Chain HB

RPL39