IL_4V8P_529

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

4V8P|1|H1|G|2330

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_529 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.1031

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

4V8P|1|H1|A|1925
4V8P|1|H1|G|1926
4V8P|1|H1|U|1927
4V8P|1|H1|C|1928
4V8P|1|H1|G|1929
4V8P|1|H1|G|1930
*
4V8P|1|H1|C|2328
4V8P|1|H1|U|2329
4V8P|1|H1|G|2330
4V8P|1|H1|U|2331

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GB

RIBOSOMAL PROTEIN L3

Chain GJ

RPL23