IL_4V8P_537

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_537 not in the Motif Atlas

Homologous match to IL_5TBW_087

Geometric discrepancy: 0.2914

The information below is about IL_5TBW_087

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V8P|1|H1|G|2201
4V8P|1|H1|A|2202
4V8P|1|H1|A|2203
4V8P|1|H1|U|2204
4V8P|1|H1|G|2205
*
4V8P|1|H1|C|2230
4V8P|1|H1|G|2231
4V8P|1|H1|C|2232

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GA

RPL8