IL_4V8P_580

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_580 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.2705

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

4V8P|1|H1|A|3300
4V8P|1|H1|G|3301
4V8P|1|H1|A|3302
4V8P|1|H1|G|3303
*
4V8P|1|H1|C|3316
4V8P|1|H1|G|3317
4V8P|1|H1|A|3318
4V8P|1|H1|U|3319

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GO

RPL19