IL_4V8P_584

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UACGGACAG*CCGAA

Length

14 nucleotides

Bulged bases

4V8P|1|A1|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_584 not in the Motif Atlas

Homologous match to IL_8P9A_282

Geometric discrepancy: 0.2322

The information below is about IL_8P9A_282

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.3

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4V8P|1|A1|U|1245
4V8P|1|A1|A|1246
4V8P|1|A1|C|1247
4V8P|1|A1|G|1248
4V8P|1|A1|G|1249
4V8P|1|A1|A|1250
4V8P|1|A1|C|1251
4V8P|1|A1|A|1252
4V8P|1|A1|G|1253
*
4V8P|1|A1|C|1310
4V8P|1|A1|C|1311
4V8P|1|A1|G|1312
4V8P|1|A1|A|1313
4V8P|1|A1|A|1314

Current chains

Chain A1

26S RRNA

Nearby chains

Chain BG

RPLP0